Hello David,
May be I misunderstood the meaning of the word "flickering" . I spook of what we name in french "scintillation atmosphérique" .
My purpose was to point out that due to "scintillation atmosphérique" short exposure time (less than 60s) may lead to scattered measurement.
For example the same night on GK Per I did some V magnitude measurements (60s exposure time, S/N about 300), the magnitude variation was about 1/3 of those you observed. Unfortunately I did the magnitude measurement during only 20 minutes and not at the same time than yours so it is difficult to compare our results.
Hubert